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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82035701_82036261_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82035701 - 82036261
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CATTGCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TAGTATTCCATT
Flanking Amino Acid:
IQVEKIEFVKGLTLVKLKVI
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
73
0.52
1
65.3
40.7
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
43.9
-0.4
2
61.97
42.5

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091