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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82036354_82038291_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
82036354 - 82038291
Intron Length:
1938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGCAAGAA
5'SS Class:
weak_major
3'SS Sequence:
CATTGGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
CTGTTCGCACCA
Flanking Amino Acid:
DPKKILTENEVRWFLYVLLS
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1
54.6
31.8
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
76.2
0.59
1
68.9
41.6
Minor 5ss
24.3
-3
3.4
27.9
38.1
Minor BPS
41.6
-0.6
2.3
54.21
44.9

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091