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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82038473_82046774_F

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
82038473 - 82046774
Intron Length:
8302

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCAAATAGA
5'SS Class:
major
3'SS Sequence:
GTGGAAATAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTCTCTGTAGGT
Flanking Amino Acid:
GPTGKTAGKVKPASQTQVIS
Intron Amino Acid Position:
1063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
71.4
38.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
46.8
-0.1
1.2
40.2
41.8
Minor 5ss
25.8
-2.8
3.7
33
35.9
Minor BPS
43.3
-0.4
2.4
62.57
48

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091