Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82054736_82055679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82054736 - 82055679

Intron Length:

944

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTACTACTA

5'SS Class:

major

3'SS Sequence:

TTCATTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TATTCCTTCATT

Flanking Amino Acid:

YQATDPADETVMTVRDDEVI

Intron Amino Acid Position:

1266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.1

0.29

1.1

42.9

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

86.8

0.83

0.7

84.7

30.1

Minor 5ss

-1.7

3.4

48.5

47.1

Minor BPS

74.5

0.85

1.7

89.11

35.7

Associated Gene:

Gene:

SPAG17

Ensembl Gene ID:

ENSAPLG00000009356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009749

81979268 - 82082358

103091