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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82055825_82058728_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82055825 - 82058728
Intron Length:
2904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
TATTAATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTGTATTAATT
Flanking Amino Acid:
LFVPEDSEETDELSEAITKK
Intron Amino Acid Position:
1314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.2
0.52
0.9
70.8
39.4
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
60
0.39
1.7
76.06
41.3

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091