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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82059470_82060575_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82059470 - 82060575
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCAATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATATAATT
Flanking Amino Acid:
MMDPEGNLFKVMADGSTSVV
Intron Amino Acid Position:
1425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.2
0.54
0.9
67.5
37.4
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
64
0.52
1.7
85.84
34

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091