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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82061895_82063515_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82061895 - 82063515
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TGATTCTTACCA
Flanking Amino Acid:
VLQEPVQEHPGVLSITVLRP
Intron Amino Acid Position:
1511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
69.8
0.45
1
61.3
43.8
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
65.1
0.47
1.6
72.6
39.2

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091