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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82063644_82064037_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82063644 - 82064037
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTATGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCTAT
U12 Branch Point Sequence:
TCTTGCCTATGT
Flanking Amino Acid:
STWNTFSPHERKITDPPVRT
Intron Amino Acid Position:
1554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
53.6
0.09
1.4
52.4
44.8
Major PPT
72
0.49
1
69.3
40.8
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
43.6
-0.4
2.5
68.01
48.5

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091