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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82066757_82075257_F

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
82066757 - 82075257
Intron Length:
8501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTCATCC
5'SS Class:
weak_major
3'SS Sequence:
AATTACTTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAAATTTTAATT
Flanking Amino Acid:
LSNKYVVLCCNNFLNVLGIW
Intron Amino Acid Position:
1679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.1
52
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
63.7
0.31
1
59.3
41.7
Minor 5ss
47.1
-0.3
2.7
60
39
Minor BPS
65.3
0.56
1.2
74.23
36.6

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091