Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82075478_82075939_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82075478 - 82075939

Intron Length:

462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATGT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTTACAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

AATACTTTAATT

Flanking Amino Acid:

RKPNFIPHKKIEDPAAGKVN

Intron Amino Acid Position:

1753

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.9

36.1

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

65.3

0.34

1.1

66.9

37.6

Minor 5ss

-1.2

3.2

56.6

47.5

Minor BPS

72.4

0.78

1.2

80.41

35.2

Associated Gene:

Gene:

SPAG17

Ensembl Gene ID:

ENSAPLG00000009356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009749

81979268 - 82082358

103091