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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82079720_82080999_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82079720 - 82080999
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CTGTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAC
U12 Branch Point Sequence:
TGCACCTTACCT
Flanking Amino Acid:
GLSVMYTPGPVAAGLQVELE
Intron Amino Acid Position:
1830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
71.7
34.5
Major BPS
60.1
0.25
1
51.3
35.1
Major PPT
73
0.52
0.8
65.7
36
Minor 5ss
43.4
-0.7
2.8
62.5
42.2
Minor BPS
63.7
0.51
1.7
77.46
44.6

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091