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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82088677_82089621_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82088677 - 82089621
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
GCATCTGTACAT
Flanking Amino Acid:
LLCRALLFLLKIHFGQITTN
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
77.1
0.61
0.9
68.5
42.1
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
42.9
-0.4
2.2
58.21
44.8

Associated Gene:

Gene:
WDR3
Ensembl Gene ID:
ENSAPLG00000005607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005853
82087648 - 82108951
21304