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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82089751_82090240_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82089751 - 82090240
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTCCATACCT
Flanking Amino Acid:
VLEVFKKVKSSELEESLLVL
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.1
0.68
0.8
77.6
31.2
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
63.5
0.5
2
84.77
41.8

Associated Gene:

Gene:
WDR3
Ensembl Gene ID:
ENSAPLG00000005607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005853
82087648 - 82108951
21304