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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82092228_82092806_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82092228 - 82092806
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
TCTGTGTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCATTCTAACCC
Flanking Amino Acid:
KAICKAAGKEVPYPVNPILR
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.4
0.64
0.9
69.3
41.8
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
49.5
-0
1.9
62.02
43.8

Associated Gene:

Gene:
WDR3
Ensembl Gene ID:
ENSAPLG00000005607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005853
82087648 - 82108951
21304