About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82092900_82093583_R


Intron Information:

Intron Rank:
20

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
82092900 - 82093583

Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCG|GTAAGATTG

5'SS Class:
strong_major

3'SS Sequence:
CTGTGCTGTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTGTGAC

U12 Branch Point Sequence:
TGTGCTGTGACT

Flanking Amino Acid:
GKKTIETIKAAERIMEAIEL

Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.5
0.77
1
72.8
39.3

Major BPS
59
0.22
1.2
52.4
43.3

Major PPT
71
0.47
1
65.1
41.2

Minor 5ss
42
-0.9
3.1
57.3
46.8

Minor BPS
51.4
0.13
2.1
75.31
42

Associated Gene:

Gene:
WDR3

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

82087648 - 82108951
21304