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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82093650_82094248_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82093650 - 82094248
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAACTAT
U12 Branch Point Sequence:
GAACTGCAAACT
Flanking Amino Acid:
ESVAKEDQPVVAGETQGETG
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
48.2
-0.1
1.2
44.9
37.7
Major PPT
75.4
0.57
0.9
70
40.8
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
37.5
-0.8
2.3
52.78
41.5

Associated Gene:

Gene:
WDR3
Ensembl Gene ID:
ENSAPLG00000005607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005853
82087648 - 82108951
21304