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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82094300_82095673_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82094300 - 82095673
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CCTGTGTTAATG
Flanking Amino Acid:
PLVLEEEREMQREAEYEESV
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.8
31.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
82.7
0.74
0.7
77.1
24.9
Minor 5ss
31.1
-2.2
3.6
44.1
44.7
Minor BPS
46
-0.4
2.2
49.4
45.6

Associated Gene:

Gene:
WDR3
Ensembl Gene ID:
ENSAPLG00000005607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005853
82087648 - 82108951
21304