About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82095809_82095912_R


Intron Information:

Intron Rank:
17

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
82095809 - 82095912

Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAGGAAGC

5'SS Class:
strong_major

3'SS Sequence:
CTCTGCTCTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTCAC

U12 Branch Point Sequence:
TGGTGCTCACGT

Flanking Amino Acid:
DKFEHIQTLEGHHQEVWCLA

Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81
0.73
1
69.9
41.1

Major BPS
69.8
0.49
1.1
71.3
36.7

Major PPT
79.1
0.65
0.8
72.8
32

Minor 5ss
32.4
-2
3.2
43.2
44

Minor BPS
41.7
-0.5
2.3
60.43
48.7

Associated Gene:

Gene:
WDR3

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

82087648 - 82108951
21304