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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82096025_82096324_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82096025 - 82096324
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TCTCCCCTATTT
Flanking Amino Acid:
CHRSLFAHDDSVMYLQFVAK
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1.3
74.1
38.3
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
81.5
0.71
0.7
73.4
31.5
Minor 5ss
28.9
-2.4
2.6
32.6
42
Minor BPS
52.1
0.14
2
74.09
42.9

Associated Gene:

Gene:
WDR3
Ensembl Gene ID:
ENSAPLG00000005607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005853
82087648 - 82108951
21304