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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82097035_82097582_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82097035 - 82097582
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCATGGC
5'SS Class:
major
3'SS Sequence:
TCTTCTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GCAGCTCTAACT
Flanking Amino Acid:
VKIFYTDTLKFFLSLYGHKL
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1
60.1
39.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
87.3
0.84
0.6
85.2
22.3
Minor 5ss
25.9
-2.8
3.2
34.9
41.5
Minor BPS
50.5
0.09
1.8
66
44.5

Associated Gene:

Gene:
WDR3
Ensembl Gene ID:
ENSAPLG00000005607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005853
82087648 - 82108951
21304