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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82104521_82104888_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82104521 - 82104888
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
GAGTCATTAACC
Flanking Amino Acid:
FKTLVGHRTEVWGMALISEE
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
66.7
0.38
1.1
63.7
41.8
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
65.8
0.48
1.6
70.07
40.6

Associated Gene:

Gene:
WDR3
Ensembl Gene ID:
ENSAPLG00000005607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005853
82087648 - 82108951
21304