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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82127063_82127889_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82127063 - 82127889
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGTTTTTCACT
Flanking Amino Acid:
EAALQKQHQRNYNRWLCQAR
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
83.4
27.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.5
0.71
0.8
73.8
36.5
Minor 5ss
35.7
-1.6
3.2
49.9
40.5
Minor BPS
60.6
0.41
1.7
77.17
40

Associated Gene:

Gene:
GDAP2
Ensembl Gene ID:
ENSAPLG00000006123
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046807
82113952 - 82131453
17502
ENSAPLT00000006380
82113952 - 82132141
18190