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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82163698_82167684_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
82163698 - 82167684
Intron Length:
3987

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCGCCCGCC
5'SS Class:
weak_major
3'SS Sequence:
CCTGCTGGTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATGTTTTGCATG
Flanking Amino Acid:
TMLPAPGSAMHPGGISCLLE
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.3
52.6
40
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
55.2
0.12
1.2
55.1
39.3
Minor 5ss
26.4
-2.7
4.3
38.6
41.9
Minor BPS
44.3
-0.6
1.8
49.34
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022769
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040106
82163533 - 82167918
4386