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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82167961_82168042_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82167961 - 82168042
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGTC
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
CTCGCCTCATCC
Flanking Amino Acid:
RAGGGAALVRCHAGVSRSVA
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
69.1
35.6
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
86.7
0.83
0.7
81
24.1
Minor 5ss
28.5
-2.5
3.6
37.5
41.8
Minor BPS
47.7
-0.1
2
57.93
46.9

Associated Gene:

Gene:
DUSP12
Ensembl Gene ID:
ENSAPLG00000019619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027824
82167686 - 82171688
4003