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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82168157_82168251_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82168157 - 82168251
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTCTCAGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
TCTCTCTCAGCG
Flanking Amino Acid:
AAVRAAKPDAEVNPGFQGQL
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
63
37.2
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
70.5
0.46
0.9
65.7
34.5
Minor 5ss
29.8
-2.3
3.1
32.5
35.7
Minor BPS
48.3
-0.2
1.9
56.74
44.6

Associated Gene:

Gene:
DUSP12
Ensembl Gene ID:
ENSAPLG00000019619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027824
82167686 - 82171688
4003