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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82169905_82170436_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82169905 - 82170436
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CAGCTTGTAACG
Flanking Amino Acid:
PALLGVMEGQLLCPKCTSKL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.6
35.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
83.3
0.75
0.9
77.3
37
Minor 5ss
30.2
-2.3
3.3
39.6
46.4
Minor BPS
44.1
-0.5
2
44.7
41.9

Associated Gene:

Gene:
DUSP12
Ensembl Gene ID:
ENSAPLG00000019619
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027824
82167686 - 82171688
4003