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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82175224_82175855_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82175224 - 82175855
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCCAA
U12 Branch Point Sequence:
TGTTCCAAGATG
Flanking Amino Acid:
LQQNGYTPYDRFCPFYKTVG
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
50.4
0.01
1.4
64.5
42.8
Major PPT
75.8
0.58
0.9
74.8
34.9
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
48.2
-0.2
2
60.17
42

Associated Gene:

Gene:
ATP6V1A
Ensembl Gene ID:
ENSAPLG00000023661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031221
82171365 - 82187280
15916