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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82175951_82177627_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82175951 - 82177627
Intron Length:
1677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GAGTACCAAACT
Flanking Amino Acid:
LAEIVQLVGKASLAETDKIT
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
83.7
0.76
0.7
76.7
32
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
45.6
-0.2
2.1
64
45.4

Associated Gene:

Gene:
ATP6V1A
Ensembl Gene ID:
ENSAPLG00000023661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031221
82171365 - 82187280
15916