About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82178649_82179436_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82178649 - 82179436
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TCTTCCCGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGATTCTGACTA
Flanking Amino Acid:
EREGSVSIVGAVSPPGGDFS
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
72.2
39.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.9
0.56
0.9
73.2
31.7
Minor 5ss
34.1
-1.8
3.4
44.6
43.6
Minor BPS
49.7
-0
1.7
61.43
38.7

Associated Gene:

Gene:
ATP6V1A
Ensembl Gene ID:
ENSAPLG00000023661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031221
82171365 - 82187280
15916