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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82179764_82180577_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82179764 - 82180577
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGAACTGTATCC
Flanking Amino Acid:
VAAREASIYTGITLSEYFRD
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
79.4
29.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.5
0.62
0.9
72.8
37.5
Minor 5ss
38.6
-1.3
3.3
53.2
45
Minor BPS
44.6
-0.4
2.2
56.56
41.8

Associated Gene:

Gene:
ATP6V1A
Ensembl Gene ID:
ENSAPLG00000023661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031221
82171365 - 82187280
15916