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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82180687_82181780_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82180687 - 82181780
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GCTGAAGTAATC
Flanking Amino Acid:
MSEVLRDFPELTMEVDGKVE
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1.1
76.5
38.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
83.6
0.76
0.6
81.8
23
Minor 5ss
32.4
-2
2.4
35.4
40.6
Minor BPS
39.7
-0.8
2.3
48.77
41.4

Associated Gene:

Gene:
ATP6V1A
Ensembl Gene ID:
ENSAPLG00000023661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031221
82171365 - 82187280
15916