About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82183243_82183984_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82183243 - 82183984
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
GTTCTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTCTGATTT
Flanking Amino Acid:
WDFTPSRNLRVGSHITGGDI
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.3
40.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.9
0.63
0.9
74
40.4
Minor 5ss
41
-1
3.1
50.4
46
Minor BPS
57.2
0.3
1.7
76.09
41.1

Associated Gene:

Gene:
ATP6V1A
Ensembl Gene ID:
ENSAPLG00000023661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031221
82171365 - 82187280
15916