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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82210820_82212448_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82210820 - 82212448
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
ATTTCTTTACCT
Flanking Amino Acid:
CLAPYRRLGIGTKMLNHVLN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
75.2
0.57
1
72.4
37.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
75.4
0.88
1.5
90.07
34.1

Associated Gene:

Gene:
NAA50
Ensembl Gene ID:
ENSAPLG00000007129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007399
82209451 - 82215064
5614