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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82221113_82232516_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82221113 - 82232516
Intron Length:
11404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
CAATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTAATT
Flanking Amino Acid:
APPPSPPSPPALFSETMPEM
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.5
40.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.1
0.68
0.9
77.4
36.3
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
76.8
0.92
1.5
90.41
32.9

Associated Gene:

Gene:
USF3
Ensembl Gene ID:
ENSAPLG00000007178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007453
82221065 - 82245577
24513