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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82232582_82234558_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82232582 - 82234558
Intron Length:
1977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTATGCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTATGCTTAACA
Flanking Amino Acid:
ENETPTKKQHRKKNRETHNA
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
78.7
31.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
74.7
0.56
1
70
40.1
Minor 5ss
39.8
-1.1
3
53.4
43.8
Minor BPS
75.7
0.8
1.7
84.37
35.6

Associated Gene:

Gene:
USF3
Ensembl Gene ID:
ENSAPLG00000007178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007453
82221065 - 82245577
24513