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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82239159_82240268_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82239159 - 82240268
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATAAA
5'SS Class:
major
3'SS Sequence:
CACTGTTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ATTGCTCTCACT
Flanking Amino Acid:
LLLNGGNNEQAEEIKKLRKQ
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.5
34.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
74.4
0.55
0.9
68.8
36.8
Minor 5ss
34
-1.8
2.8
33.4
42
Minor BPS
48.9
-0
2.1
74.59
42.5

Associated Gene:

Gene:
USF3
Ensembl Gene ID:
ENSAPLG00000007178
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007453
82221065 - 82245577
24513