About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82257621_82258020_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82257621 - 82258020
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
AGCTGTCTAATG
Flanking Amino Acid:
LIVGNLVNWSFAIFGLVYRP
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
70.9
39.3
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
79.7
0.67
0.7
77.3
24.7
Minor 5ss
37
-1.5
3.4
55.1
43.5
Minor BPS
43.8
-0.6
2
46.57
40.9

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042974
82254897 - 82292184
37288
ENSAPLT00000042448
82256350 - 82292184
35835
ENSAPLT00000007493
82256350 - 82292184
35835