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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82258068_82259249_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82258068 - 82259249
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
GTCTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GCTTTCGTACGC
Flanking Amino Acid:
IQQCSRPMYMDRMVLLIVGN
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
71.2
0.53
1
61
37.5
Major PPT
81.9
0.72
0.8
73.4
37.2
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
42.1
-0.6
2.4
53.59
44.7

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042974
82254897 - 82292184
37288
ENSAPLT00000042448
82256350 - 82292184
35835
ENSAPLT00000007493
82256350 - 82292184
35835