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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82259954_82260361_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82259954 - 82260361
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTGCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAC
U12 Branch Point Sequence:
TTCTCCTTCCTC
Flanking Amino Acid:
QIYYMGRFKIDGPDSDLGIF
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
59.6
0.24
1
65.2
28.2
Major PPT
71.8
0.49
0.9
69.1
37
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
44.1
-0.4
3.6
69.44
42.9

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007493
82256350 - 82292184
35835