About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82260471_82261606_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82260471 - 82261606
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGGCTC
5'SS Class:
major
3'SS Sequence:
TACTTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCTTTTAACA
Flanking Amino Acid:
VVICLAVLGVVFGKNGMWFW
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
62.2
42.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.3
0.7
0.8
78
35.1
Minor 5ss
41.5
-0.9
3.3
55.8
43.2
Minor BPS
72
0.69
1.2
76.03
35.3

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042974
82254897 - 82292184
37288
ENSAPLT00000042448
82256350 - 82292184
35835
ENSAPLT00000007493
82256350 - 82292184
35835