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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82262586_82263633_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82262586 - 82263633
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGAAC
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAC
U12 Branch Point Sequence:
TGTTCTCTTACA
Flanking Amino Acid:
AMEMKDIYTLDYGIPKHFGL
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
65.7
40
Major BPS
49.6
-0
1.4
51.3
43.9
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
31.3
-2.1
3.4
38.8
41.2
Minor BPS
56
0.18
2
73.03
38.3

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042974
82254897 - 82292184
37288
ENSAPLT00000042448
82256350 - 82292184
35835
ENSAPLT00000007493
82256350 - 82292184
35835