Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82264280_82265141_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82264280 - 82265141

Intron Length:

862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGCGTTGG

5'SS Class:

major

3'SS Sequence:

CCTTTCTGTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

GATTTGCTAACA

Flanking Amino Acid:

VIQLVITYQTVVNVTGNQDI

Intron Amino Acid Position:

464

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

57.2

44.3

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

80.6

0.69

0.9

76.1

32.4

Minor 5ss

33.6

-1.9

40.2

45.9

Minor BPS

48.2

-0.1

2.3

65.81

40.2

Associated Gene:

Gene:

SIDT1

Ensembl Gene ID:

ENSAPLG00000007209

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042974

82254897 - 82292184

37288

ENSAPLT00000042448

82256350 - 82292184

35835

ENSAPLT00000007493

82256350 - 82292184

35835