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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82265865_82266142_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82265865 - 82266142
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTGATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTTCTCTCATT
Flanking Amino Acid:
ESDKNVIRTKVFLYLSDLSR
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
70.2
0.46
1
66.6
44.2
Minor 5ss
40.5
-1.1
3.3
55.3
48.9
Minor BPS
52
0.14
2
75.83
41.7

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007493
82256350 - 82292184
35835
ENSAPLT00000042974
82254897 - 82292184
37288
ENSAPLT00000042448
82256350 - 82292184
35835