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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82267031_82269975_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82267031 - 82269975
Intron Length:
2945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
GTTCTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTGGAACTAACT
Flanking Amino Acid:
ASSGRLSPEDGSGIVTSSHP
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.2
36.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
82.1
0.72
0.9
76.5
37.5
Minor 5ss
41.2
-1
3
53.8
44.4
Minor BPS
44.2
-0.3
2.1
63.96
45.4

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042974
82254897 - 82292184
37288
ENSAPLT00000042448
82256350 - 82292184
35835
ENSAPLT00000007493
82256350 - 82292184
35835