Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82270020_82271140_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82270020 - 82271140

Intron Length:

1121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TGCTCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TGTTTCATGAGT

Flanking Amino Acid:

SVIVAFVHYIRVRRKASSGR

Intron Amino Acid Position:

328

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

79.3

31.1

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

83.4

0.75

0.8

80.7

31.3

Minor 5ss

28.1

-2.5

2.7

31.6

42.6

Minor BPS

53.2

0.18

1.9

76.47

40.1

Associated Gene:

Gene:

SIDT1

Ensembl Gene ID:

ENSAPLG00000007209

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042974

82254897 - 82292184

37288

ENSAPLT00000042448

82256350 - 82292184

35835

ENSAPLT00000007493

82256350 - 82292184

35835