About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82271235_82271503_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82271235 - 82271503
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTCAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGTGGGCTGACT
Flanking Amino Acid:
LQVTIVPSINRSVYIQAMFF
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.3
65.5
40.4
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
87.1
0.84
0.7
80.8
31.2
Minor 5ss
34.9
-1.7
3.3
50.1
40.3
Minor BPS
40.2
-0.6
2.6
64.44
46

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042448
82256350 - 82292184
35835
ENSAPLT00000007493
82256350 - 82292184
35835
ENSAPLT00000042974
82254897 - 82292184
37288