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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82274179_82276571_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82274179 - 82276571
Intron Length:
2393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGGATTGTAACT
Flanking Amino Acid:
NFTASPSQPQYFLYKFPQDV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
79.5
0.66
0.8
77
31.7
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
49
0.01
2
68.47
42.8

Associated Gene:

Gene:
SIDT1
Ensembl Gene ID:
ENSAPLG00000007209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007493
82256350 - 82292184
35835
ENSAPLT00000042974
82254897 - 82292184
37288
ENSAPLT00000042448
82256350 - 82292184
35835