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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82297044_82298085_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82297044 - 82298085
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CATGTTTATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGATTTTTAATT
Flanking Amino Acid:
TVHRATPEDILRRHEIHKSK
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
80.5
34.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71
0.47
1
66.3
39.5
Minor 5ss
47.7
-0.2
2.8
67.9
37.2
Minor BPS
73.2
0.81
1.1
80.88
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015642
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016311
82296594 - 82318711
22118
ENSAPLT00000036835
82296594 - 82316987
20394
ENSAPLT00000030014
82296594 - 82319019
22426
ENSAPLT00000020132
82295676 - 82314544
18869