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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82300472_82300973_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82300472 - 82300973
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACCAT
5'SS Class:
major
3'SS Sequence:
CTGATTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTCCTGATTT
Flanking Amino Acid:
LFGDAPRTRTGFPNVTVAPN
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.1
44.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73
0.52
0.9
70.4
36.2
Minor 5ss
37.5
-1.4
3.5
55.3
48.9
Minor BPS
63.5
0.5
1.7
80.66
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015642
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036835
82296594 - 82316987
20394
ENSAPLT00000030014
82296594 - 82319019
22426
ENSAPLT00000020132
82295676 - 82314544
18869
ENSAPLT00000016311
82296594 - 82318711
22118