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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82303179_82303926_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
82303179 - 82303926
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTTAGTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAATGACT
Flanking Amino Acid:
SGKQKQISAKMKRKQTVQNS
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.2
56.5
36.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.7
0.71
0.7
74
31.1
Minor 5ss
41.9
-0.9
3.2
56
43
Minor BPS
60.7
0.42
1.9
84.3
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015642
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030014
82296594 - 82319019
22426
ENSAPLT00000020132
82295676 - 82314544
18869
ENSAPLT00000016311
82296594 - 82318711
22118
ENSAPLT00000036835
82296594 - 82316987
20394